Protify
Collection
75 items • Updated
Dataset Viewer
The dataset viewer is not available for this dataset.
Unexpected token '<', "<html>
<h"... is not valid JSON
Need help to make the dataset viewer work? Make sure to review how to configure the dataset viewer, and open a discussion for direct support.
UniProt search (7/22/2025): * (Swiss-Prot reviewed entries only) download TSV with Taxonomic lineage (Ids), sequence, and length.
Curation steps:
- Filtered for sequence length >=20 and <=2048
- Extract Taxonomic IDs (domain, kingdom, phylum, class, order, family, genus, species) from taxonomic_lineage_ids column
- Keep entry, phylum, and sequence information
- Drop N/A
- CD-HIT using Docker at 80% similarity threshold and n=5
- Keep representative sequences
- Create labels based on phylum
- Remove phylum/examples with fewer than 100 samples
- Stratified split: first get test set (5,000), then eval (5,000), rest is train
- Downloads last month
- 7